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| import py2neo import os import json import logging logging.getLogger().setLevel(logging.INFO) class MedicalGraph: def __init__(self): cur_dir = '\\'.join(os.path.abspath(__file__).split('\\')[:-1]) self.data_path = os.path.join(cur_dir,'data\\medical.json') self.clinet = py2neo.Graph("http://127.0.0.1:7474", user='neo4j', password='12345678', name='neo4j') def clean(self): logging.info("================正在删除所有节点和关系================") self.clinet.run("match (n) detach delete (n)") def read_json(self): drugs = [] foods = [] checks = [] departments = [] producers = [] diseases = [] symptoms = [] cures = [] rels_department = [] rels_noteat = [] rels_doeat = [] rels_recommandeat = [] rels_commonddrug = [] rels_recommanddrug = [] rels_check = [] rels_drug_producer = [] rels_cureway = [] rels_symptom = [] rels_acompany = [] rels_category = [] disease_infos = [] for data in open(self.data_path,'rb'): data_json = json.loads(data) diseases.append(data_json['name']) disease_dict = {} disease_name = data_json['name'] disease_dict['name'] = disease_name disease_dict['desc'] = '' disease_dict['prevent'] = '' disease_dict['cause'] = '' disease_dict['easy_get'] = '' disease_dict['cure_department'] = '' disease_dict['cure_way'] = '' disease_dict['cure_lasttime'] = '' disease_dict['symptom'] = '' disease_dict['cured_prob'] = '' if 'desc' in data_json: disease_dict['desc'] = data_json['desc'] if 'prevent' in data_json: disease_dict['prevent'] = data_json['prevent'] if 'cause' in data_json: disease_dict['cause'] = data_json['cause'] if 'easy_get' in data_json: disease_dict['easy_get'] = data_json['easy_get'] if 'cure_department' in data_json: cure_department = data_json['cure_department'] if len(cure_department)==1: rels_category.append([disease_name,cure_department[0]]) if len(cure_department)==2: big = cure_department[0] small = cure_department[1] rels_department.append([small,big]) rels_category.append([disease_name,cure_department[0]]) departments += cure_department if 'cure_way' in data_json: cure_way = data_json['cure_way'] for cure in cure_way: rels_cureway.append([disease_name,cure]) cures += cure_way if 'cure_lasttime' in data_json: disease_dict['cure_lasttime'] = data_json['cure_lasttime'] if 'symptom' in data_json: for symptom in data_json['symptom']: rels_symptom.append([disease_name, symptom]) symptoms += data_json['symptom'] if 'cured_prob' in data_json: disease_dict['cured_prob'] = data_json['cured_prob'] if 'get_prob' in data_json: disease_dict['get_prob'] = data_json['get_prob'] if 'easy_get' in data_json: disease_dict['easy_get'] = data_json['easy_get'] if 'acompany' in data_json: for acompany in data_json['acompany']: rels_acompany.append([disease_name, acompany]) if 'common_drug' in data_json: common_drug = data_json['common_drug'] for drug in common_drug: rels_commonddrug.append([disease_name, drug]) drugs += common_drug if 'recommand_drug' in data_json: recommand_drug = data_json['recommand_drug'] drugs += recommand_drug for drug in recommand_drug: rels_recommanddrug.append([disease_name, drug]) if 'not_eat' in data_json: not_eat = data_json['not_eat'] for _not in not_eat: rels_noteat.append([disease_name,_not]) foods += not_eat if 'do_eat' in data_json: do_eat = data_json['do_eat'] for _do in do_eat: rels_doeat.append([disease_name,_do]) foods += do_eat if 'recommand_eat' in data_json: recommand_eat = data_json['recommand_eat'] for _recommand in recommand_eat: rels_recommandeat.append([disease_name, _recommand]) foods += recommand_eat if 'check' in data_json: check = data_json['check'] for _check in check: rels_check.append([disease_name, _check]) checks += check if 'drug_detail' in data_json: drug_detail = data_json['drug_detail'] producer = [i.split('(')[0] for i in drug_detail] rels_drug_producer += [[i.split('(')[0], i.split('(')[-1].replace(')', '')] for i in drug_detail] producers += producer disease_infos.append(disease_dict) return set(drugs), set(foods), set(checks), set(departments), set(producers), set(symptoms), set(diseases), set( cures), disease_infos,rels_check, rels_recommandeat, rels_noteat, rels_doeat, rels_department, rels_commonddrug, rels_drug_producer, rels_recommanddrug, \ rels_symptom, rels_acompany, rels_category, rels_cureway def create_diseases_nodes(self,disease_infos): logging.info("================正在创建疾病实体节点================") sum = len(disease_infos) count = 0 for disease_dict in disease_infos: node = py2neo.Node("Disease",name=disease_dict['name'], desc=disease_dict['desc'], prevent=disease_dict['prevent'] ,cause=disease_dict['cause'], easy_get=disease_dict['easy_get'],cure_lasttime=disease_dict['cure_lasttime'], cured_prob=disease_dict['cured_prob']) self.clinet.create(node) count += 1 if count % 2000==0: logging.info("已经创建%d个节点,总共%d个节点",count,sum) logging.info("已创建完成,共创建%d个节点", count) return def create_simple_nodes(self,label,nodes): logging.info("================正在创建%s实体节点================",label) count = 0 sum = len(nodes) for node_name in nodes: node = py2neo.Node(label,name=node_name) self.clinet.create(node) count += 1 if count%2000==0: logging.info("已经创建%d个节点,总共%d个节点", count, sum) logging.info("已创建完成,共创建%d个节点", count) def create_relationship(self,start_node,end_node,edges_list,rel_type,rel_name): logging.info("================正在构建%s关系================", rel_name) set_edges = [] for edge in edges_list: set_edges.append('###'.join(edge)) set_edges = set(set_edges) for edge in set_edges: edge = edge.split('###') p_name = edge[0] q_name = edge[1] cmd = """match (p:%s {name:"%s"}),(q:%s {name:"%s"}) create (p)-[rel:%s {name:"%s"}]->(q)""" % (start_node,p_name,end_node,q_name,rel_type,rel_name) self.clinet.run(cmd) def create_graph_nodes(self): Drugs, Foods, Checks, Departments, Producers, Symptoms, Diseases, Cures, disease_infos, rels_check, rels_recommandeat, rels_noteat, rels_doeat, rels_department, rels_commonddrug, rels_drug_producer, rels_recommanddrug, rels_symptom, rels_acompany, rels_category, rels_cureway = self.read_json() self.create_diseases_nodes(disease_infos) self.create_simple_nodes('Drug', Drugs) self.create_simple_nodes('Food', Foods) self.create_simple_nodes('Check', Checks) self.create_simple_nodes('Department', Departments) self.create_simple_nodes('Producer', Producers) self.create_simple_nodes('Symptom', Symptoms) self.create_simple_nodes('Cure', Cures) def create_graph_relationship(self): Drugs, Foods, Checks, Departments, Producers, Symptoms, Diseases, Cures, disease_infos, rels_check, rels_recommandeat, rels_noteat, rels_doeat, rels_department, rels_commonddrug, rels_drug_producer, rels_recommanddrug, rels_symptom, rels_acompany, rels_category, rels_cureway = self.read_json() self.create_relationship('Disease', 'Food', rels_recommandeat, 'recommand_eat', '推荐食谱') self.create_relationship('Disease', 'Food', rels_noteat, 'no_eat', '忌吃') self.create_relationship('Disease', 'Food', rels_doeat, 'do_eat', '宜吃') self.create_relationship('Department', 'Department', rels_department, 'belongs_to', '属于') self.create_relationship('Disease', 'Drug', rels_commonddrug, 'common_drug', '常用药品') self.create_relationship('Producer', 'Drug', rels_drug_producer, 'drugs_of', '生产药品') self.create_relationship('Disease', 'Drug', rels_recommanddrug, 'recommand_drug', '好评药品') self.create_relationship('Disease', 'Check', rels_check, 'need_check', '诊断检查') self.create_relationship('Disease', 'Symptom', rels_symptom, 'has_symptom', '症状') self.create_relationship('Disease', 'Disease', rels_acompany, 'acompany_with', '并发症') self.create_relationship('Disease', 'Department', rels_category, 'belongs_to', '所属科室') self.create_relationship('Disease', 'Cure', rels_cureway, 'cure_way','治疗方法') if __name__ == '__main__': handler = MedicalGraph() handler.clean() handler.create_graph_nodes() handler.create_graph_relationship()
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